Development of polymorphic microsatellite markers based on expressed sequence tags in Populus cathayana (Salicaceae).
Identifieur interne : 001924 ( Main/Exploration ); précédent : 001923; suivant : 001925Development of polymorphic microsatellite markers based on expressed sequence tags in Populus cathayana (Salicaceae).
Auteurs : Z Z Tian [République populaire de Chine] ; F Q Zhang [République populaire de Chine] ; Z Y Cai [République populaire de Chine] ; S L Chen [République populaire de Chine]Source :
- Genetics and molecular research : GMR [ 1676-5680 ] ; 2016.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical : Genetic Markers.
- genetics : Populus.
- Expressed Sequence Tags, Gene Frequency, Heterozygote, Microsatellite Repeats, Polymorphism, Genetic.
Abstract
Populus cathayana occupies a large area within the northern, central, and southwestern regions of China, and is considered to be an important reforestation species in western China. In order to investigate the population genetic structure of this species, 10 polymorphic microsatellite loci were identified based on expressed sequence tags from de novo sequencing on the Illumina HiSeq 2000 platform. All microsatellite primers were tested on 48 P. cathayana individuals from four locations on the Qinghai-Tibet Plateau. The observed heterozygosity ranged from 0.000 to 1.000, and the null-allele frequency ranged from 0.000 to 0.904. These microsatellite markers may be a useful tool in genetic studies on P. cathayana and closely related species.
DOI: 10.4238/gmr.15038406
PubMed: 27525845
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Development of polymorphic microsatellite markers based on expressed sequence tags in Populus cathayana (Salicaceae).</title><author><name sortKey="Tian, Z Z" sort="Tian, Z Z" uniqKey="Tian Z" first="Z Z" last="Tian">Z Z Tian</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining</wicri:regionArea><wicri:noRegion>Xining</wicri:noRegion></affiliation><affiliation wicri:level="3"><nlm:affiliation>University of Chinese Academy of Sciences, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, F Q" sort="Zhang, F Q" uniqKey="Zhang F" first="F Q" last="Zhang">F Q Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Molecular Breeding, Qinghai Province, Xining, China fqzhang@nwipb.cas.cn.</nlm:affiliation><country wicri:rule="url">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Molecular Breeding, Qinghai Province, Xining</wicri:regionArea><wicri:noRegion>Xining</wicri:noRegion></affiliation></author><author><name sortKey="Cai, Z Y" sort="Cai, Z Y" uniqKey="Cai Z" first="Z Y" last="Cai">Z Y Cai</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining</wicri:regionArea><wicri:noRegion>Xining</wicri:noRegion></affiliation></author><author><name sortKey="Chen, S L" sort="Chen, S L" uniqKey="Chen S" first="S L" last="Chen">S L Chen</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining</wicri:regionArea><wicri:noRegion>Xining</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2016">2016</date><idno type="RBID">pubmed:27525845</idno><idno type="pmid">27525845</idno><idno type="doi">10.4238/gmr.15038406</idno><idno type="wicri:Area/Main/Corpus">001663</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001663</idno><idno type="wicri:Area/Main/Curation">001663</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001663</idno><idno type="wicri:Area/Main/Exploration">001663</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Development of polymorphic microsatellite markers based on expressed sequence tags in Populus cathayana (Salicaceae).</title><author><name sortKey="Tian, Z Z" sort="Tian, Z Z" uniqKey="Tian Z" first="Z Z" last="Tian">Z Z Tian</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining</wicri:regionArea><wicri:noRegion>Xining</wicri:noRegion></affiliation><affiliation wicri:level="3"><nlm:affiliation>University of Chinese Academy of Sciences, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, F Q" sort="Zhang, F Q" uniqKey="Zhang F" first="F Q" last="Zhang">F Q Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Molecular Breeding, Qinghai Province, Xining, China fqzhang@nwipb.cas.cn.</nlm:affiliation><country wicri:rule="url">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Molecular Breeding, Qinghai Province, Xining</wicri:regionArea><wicri:noRegion>Xining</wicri:noRegion></affiliation></author><author><name sortKey="Cai, Z Y" sort="Cai, Z Y" uniqKey="Cai Z" first="Z Y" last="Cai">Z Y Cai</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining</wicri:regionArea><wicri:noRegion>Xining</wicri:noRegion></affiliation></author><author><name sortKey="Chen, S L" sort="Chen, S L" uniqKey="Chen S" first="S L" last="Chen">S L Chen</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining</wicri:regionArea><wicri:noRegion>Xining</wicri:noRegion></affiliation></author></analytic><series><title level="j">Genetics and molecular research : GMR</title><idno type="eISSN">1676-5680</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Expressed Sequence Tags (MeSH)</term><term>Gene Frequency (MeSH)</term><term>Genetic Markers (MeSH)</term><term>Heterozygote (MeSH)</term><term>Microsatellite Repeats (MeSH)</term><term>Polymorphism, Genetic (MeSH)</term><term>Populus (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Fréquence d'allèle (MeSH)</term><term>Hétérozygote (MeSH)</term><term>Marqueurs génétiques (MeSH)</term><term>Polymorphisme génétique (MeSH)</term><term>Populus (génétique)</term><term>Répétitions microsatellites (MeSH)</term><term>Étiquettes de séquences exprimées (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Expressed Sequence Tags</term><term>Gene Frequency</term><term>Heterozygote</term><term>Microsatellite Repeats</term><term>Polymorphism, Genetic</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Fréquence d'allèle</term><term>Hétérozygote</term><term>Marqueurs génétiques</term><term>Polymorphisme génétique</term><term>Répétitions microsatellites</term><term>Étiquettes de séquences exprimées</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Populus cathayana occupies a large area within the northern, central, and southwestern regions of China, and is considered to be an important reforestation species in western China. In order to investigate the population genetic structure of this species, 10 polymorphic microsatellite loci were identified based on expressed sequence tags from de novo sequencing on the Illumina HiSeq 2000 platform. All microsatellite primers were tested on 48 P. cathayana individuals from four locations on the Qinghai-Tibet Plateau. The observed heterozygosity ranged from 0.000 to 1.000, and the null-allele frequency ranged from 0.000 to 0.904. These microsatellite markers may be a useful tool in genetic studies on P. cathayana and closely related species. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27525845</PMID><DateCompleted><Year>2017</Year><Month>02</Month><Day>08</Day></DateCompleted><DateRevised><Year>2017</Year><Month>02</Month><Day>24</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1676-5680</ISSN><JournalIssue CitedMedium="Internet"><Volume>15</Volume><Issue>3</Issue><PubDate><Year>2016</Year><Month>Jul</Month><Day>15</Day></PubDate></JournalIssue><Title>Genetics and molecular research : GMR</Title><ISOAbbreviation>Genet Mol Res</ISOAbbreviation></Journal><ArticleTitle>Development of polymorphic microsatellite markers based on expressed sequence tags in Populus cathayana (Salicaceae).</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.4238/gmr.15038406</ELocationID><Abstract><AbstractText>Populus cathayana occupies a large area within the northern, central, and southwestern regions of China, and is considered to be an important reforestation species in western China. In order to investigate the population genetic structure of this species, 10 polymorphic microsatellite loci were identified based on expressed sequence tags from de novo sequencing on the Illumina HiSeq 2000 platform. All microsatellite primers were tested on 48 P. cathayana individuals from four locations on the Qinghai-Tibet Plateau. The observed heterozygosity ranged from 0.000 to 1.000, and the null-allele frequency ranged from 0.000 to 0.904. These microsatellite markers may be a useful tool in genetic studies on P. cathayana and closely related species. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Tian</LastName><ForeName>Z Z</ForeName><Initials>ZZ</Initials><AffiliationInfo><Affiliation>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>University of Chinese Academy of Sciences, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>F Q</ForeName><Initials>FQ</Initials><AffiliationInfo><Affiliation>Key Laboratory of Crop Molecular Breeding, Qinghai Province, Xining, China fqzhang@nwipb.cas.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cai</LastName><ForeName>Z Y</ForeName><Initials>ZY</Initials><AffiliationInfo><Affiliation>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>S L</ForeName><Initials>SL</Initials><AffiliationInfo><Affiliation>Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>07</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>Brazil</Country><MedlineTA>Genet Mol Res</MedlineTA><NlmUniqueID>101169387</NlmUniqueID><ISSNLinking>1676-5680</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D020224" MajorTopicYN="Y">Expressed Sequence Tags</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005787" MajorTopicYN="N">Gene Frequency</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006579" MajorTopicYN="N">Heterozygote</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="Y">Microsatellite Repeats</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011110" MajorTopicYN="Y">Polymorphism, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><CoiStatement>The authors declare no conflict of interest.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>8</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>8</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>2</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27525845</ArticleId><ArticleId IdType="pii">gmr8406</ArticleId><ArticleId IdType="doi">10.4238/gmr.15038406</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Tian, Z Z" sort="Tian, Z Z" uniqKey="Tian Z" first="Z Z" last="Tian">Z Z Tian</name></noRegion><name sortKey="Cai, Z Y" sort="Cai, Z Y" uniqKey="Cai Z" first="Z Y" last="Cai">Z Y Cai</name><name sortKey="Chen, S L" sort="Chen, S L" uniqKey="Chen S" first="S L" last="Chen">S L Chen</name><name sortKey="Tian, Z Z" sort="Tian, Z Z" uniqKey="Tian Z" first="Z Z" last="Tian">Z Z Tian</name><name sortKey="Zhang, F Q" sort="Zhang, F Q" uniqKey="Zhang F" first="F Q" last="Zhang">F Q Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001924 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001924 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:27525845
|texte= Development of polymorphic microsatellite markers based on expressed sequence tags in Populus cathayana (Salicaceae).
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:27525845" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |